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modify dashboard and services fetch source data

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This commit is contained in:
pcalengratha
2026-04-08 14:48:42 +07:00
parent f0a5079b15
commit 4534f502e2
9 changed files with 1322 additions and 241 deletions
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81
dashboard/app/Http/Controllers/Api/DashboardController.php
View File

@@ -139,6 +139,87 @@ class DashboardController extends Controller
return response()->json($data);
}
/*
|--------------------------------------------------------------------------
| Influenza subtype distribution (Overview)
|--------------------------------------------------------------------------
*/
public function influenzaSubtypeDetected(Request $request)
{
$range = $this->getEpiRange($request);
if (!$range) {
return response()->json(['error' => 'Missing epiweek range'], 400);
}
$data = $this->service->influenzaSubtypeDetected(
$range['startYear'],
$range['startWeek'],
$range['endYear'],
$range['endWeek']
);
return response()->json($data);
}
public function covidDistributedByAgeGroup(Request $request)
{
$range = $this->getEpiRange($request);
if (!$range) {
return response()->json(['error' => 'Missing epiweek range'], 400);
}
$data = $this->service->covidDistributedByAgeGroup(
$range['startYear'],
$range['startWeek'],
$range['endYear'],
$range['endWeek']
);
return response()->json($data);
}
public function covidLineageRelativeOverTime(Request $request)
{
$range = $this->getEpiRange($request);
if (!$range) {
return response()->json(['error' => 'Missing epiweek range'], 400);
}
$data = $this->service->covidLineageRelativeOverTime(
$range['startYear'],
$range['startWeek'],
$range['endYear'],
$range['endWeek']
);
return response()->json($data);
}
public function influenzaRelativeOverTime(Request $request)
{
$range = $this->getEpiRange($request);
if (!$range) {
return response()->json(['error' => 'Missing epiweek range'], 400);
}
$data = $this->service->influenzaRelativeOverTime(
$range['startYear'],
$range['startWeek'],
$range['endYear'],
$range['endWeek']
);
return response()->json($data);
}
/*
|--------------------------------------------------------------------------

173
dashboard/app/Services/DashboardService.php
View File

@@ -575,6 +575,33 @@ class DashboardService
*/
public function provinceCircles($startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::join('case_lab_results', function ($join) {
$join->on('surveillance_cases.lab_code', '=', 'case_lab_results.lab_code')
->on('surveillance_cases.surveillance_id', '=', 'case_lab_results.surveillance_id');
})
->where(function ($q) use ($startYear, $startWeek, $endYear, $endWeek) {
$q->whereRaw(
"(surveillance_cases.year_data * 100 + surveillance_cases.week_data) BETWEEN ? AND ?",
[
$startYear * 100 + $startWeek,
$endYear * 100 + $endWeek
]
);
})
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id not in(6) and case_lab_results.indicator="Influenza"')
->selectRaw("
surveillance_cases.patient_province,
case_lab_results.subtype as pathogen_name,
COUNT(DISTINCT surveillance_cases.lab_code) as total
")
->groupBy(
'surveillance_cases.patient_province',
'case_lab_results.subtype'
)
->get();
return SurveillanceCase::leftJoin(
'case_lab_results',
'surveillance_cases.lab_code',
@@ -590,28 +617,156 @@ class DashboardService
->whereRaw(
"(surveillance_cases.year_data < ? OR (surveillance_cases.year_data = ? AND surveillance_cases.week_data <= ?))",
[$endYear, $endYear, $endWeek]
);
)
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id not in(6)');
})
->selectRaw("
surveillance_cases.patient_province,
surveillance_cases.surveillance_id,
case_lab_results.pathogen_name,
COUNT(DISTINCT surveillance_cases.lab_code) as total,
COUNT(DISTINCT CASE
WHEN case_lab_results.is_positive = 1
THEN surveillance_cases.lab_code
END) as positive
COUNT(DISTINCT surveillance_cases.lab_code) as total
")
->groupBy(
'surveillance_cases.patient_province',
'surveillance_cases.surveillance_id'
'case_lab_results.pathogen_name'
)
->get();
}
/* Start Overview Section */
public function influenzaSubtypeDetected($startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::join('case_lab_results', function ($join) {
$join->on('surveillance_cases.lab_code', '=', 'case_lab_results.lab_code')
->on('surveillance_cases.surveillance_id', '=', 'case_lab_results.surveillance_id');
})
->where(function ($q) use ($startYear, $startWeek, $endYear, $endWeek) {
$q->whereRaw(
"(surveillance_cases.year_data * 100 + surveillance_cases.week_data) BETWEEN ? AND ?",
[
$startYear * 100 + $startWeek,
$endYear * 100 + $endWeek
]
);
})
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id not in(6) and case_lab_results.indicator="Influenza"')
->selectRaw("
case_lab_results.subtype,
COUNT(DISTINCT surveillance_cases.lab_code) as total
")
->groupBy(
'case_lab_results.subtype'
)
->get();
}
public function covidDistributedByAgeGroup($startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::join('case_lab_results', function ($join) {
$join->on('surveillance_cases.lab_code', '=', 'case_lab_results.lab_code')
->on('surveillance_cases.surveillance_id', '=', 'case_lab_results.surveillance_id');
})
->where(function ($q) use ($startYear, $startWeek, $endYear, $endWeek) {
$q->whereRaw(
"(surveillance_cases.year_data * 100 + surveillance_cases.week_data) BETWEEN ? AND ?",
[
$startYear * 100 + $startWeek,
$endYear * 100 + $endWeek
]
);
})
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id not in(6) and case_lab_results.indicator="Covid-19"')
->selectRaw("
CASE
WHEN patient_age_inday <= 28 THEN '0–28 days'
WHEN patient_age_inday <= 364 THEN '29 days–11 months'
WHEN patient_age_inday <= 1460 THEN '1–4 years'
WHEN patient_age_inday <= 5110 THEN '5–14 years'
WHEN patient_age_inday <= 8765 THEN '15–24 years'
WHEN patient_age_inday <= 18250 THEN '25–49 years'
WHEN patient_age_inday <= 23725 THEN '50–64 years'
ELSE '65+ years'
END as age_group,
CASE
WHEN patient_age_inday <= 28 THEN 1
WHEN patient_age_inday <= 364 THEN 2
WHEN patient_age_inday <= 1460 THEN 3
WHEN patient_age_inday <= 5110 THEN 4
WHEN patient_age_inday <= 8765 THEN 5
WHEN patient_age_inday <= 18250 THEN 6
WHEN patient_age_inday <= 23725 THEN 7
ELSE 8
END as age_order,
COUNT(*) as total
")
->groupBy('age_group', 'age_order')
->orderBy('age_order')
->get();
}
public function covidLineageRelativeOverTime($startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::join('case_lab_results', function ($join) {
$join->on('surveillance_cases.lab_code', '=', 'case_lab_results.lab_code')
->on('surveillance_cases.surveillance_id', '=', 'case_lab_results.surveillance_id');
})
->where(function ($q) use ($startYear, $startWeek, $endYear, $endWeek) {
$q->whereRaw(
"(surveillance_cases.year_data * 100 + surveillance_cases.week_data) BETWEEN ? AND ?",
[
$startYear * 100 + $startWeek,
$endYear * 100 + $endWeek
]
);
})
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id=6 and case_lab_results.indicator="Covid-19" and case_lab_results.pathogen_name not in("","unable to align","N/A","NA")')
->selectRaw("
case_lab_results.pathogen_name as lineage,
concat(surveillance_cases.year_data,'-',surveillance_cases.week_data) as week,
COUNT(DISTINCT surveillance_cases.lab_code) as total
")
->groupBy(
'case_lab_results.pathogen_name',
'week'
)
->get();
}
public function influenzaRelativeOverTime($startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::join('case_lab_results', function ($join) {
$join->on('surveillance_cases.lab_code', '=', 'case_lab_results.lab_code')
->on('surveillance_cases.surveillance_id', '=', 'case_lab_results.surveillance_id');
})
->where(function ($q) use ($startYear, $startWeek, $endYear, $endWeek) {
$q->whereRaw(
"(surveillance_cases.year_data * 100 + surveillance_cases.week_data) BETWEEN ? AND ?",
[
$startYear * 100 + $startWeek,
$endYear * 100 + $endWeek
]
);
})
->whereRaw('case_lab_results.is_positive = 1 and surveillance_cases.surveillance_id not in(6) and case_lab_results.indicator="Influenza"')
->selectRaw("
case_lab_results.subtype as lineage,
concat(surveillance_cases.year_data,'-',surveillance_cases.week_data) as week,
COUNT(DISTINCT surveillance_cases.lab_code) as total
")
->groupBy(
'case_lab_results.subtype',
'week'
)
->get();
}
/* End Overview Section */
public function provinceProgram($surveillanceId, $startYear, $startWeek, $endYear, $endWeek)
{
return SurveillanceCase::selectRaw("

364
dashboard/app/Services/DataRetrievalService.php
View File

@@ -20,7 +20,7 @@ class DataRetrievalService
$this->getILICases(now()->subDays(config('app.lookback_days.ILI'))->toDateString(), $toDate); // done
$this->getLBMCases(now()->subDays(config('app.lookback_days.LBM'))->toDateString(), $toDate); // done
$this->getAFICases(now()->subDays(config('app.lookback_days.AFI'))->toDateString(), $toDate); // done
//$this->getNSDCases(now()->subDays(config('app.lookback_days.NDS'))->toDateString(), $toDate);
$this->getNSDCases(now()->subDays(config('app.lookback_days.NDS'))->toDateString(), $toDate);
$this->getSEQCases(now()->subDays(config('app.lookback_days.SEQ'))->toDateString(), $toDate); // done
Log::channel('jobs')->info($toDate->toDateString(). ' Service Reload Data Successfully Ran');
return true;
@@ -42,24 +42,35 @@ class DataRetrievalService
->select("
SELECT
patient.labcode,
patient.patdate,
min(if(year(tps.collected)=0,patient.patdate, tps.collected)) as patdate,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
1 as surveillance_id,
niphc0_nphl.get_epi_period(patient.patdate, 'Y') as year_data,
niphc0_nphl.get_epi_period(patient.patdate, 'W') as week_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'Y')) as year_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'W')) as week_data,
patient.patage,
patient.patsex,
NULL as is_alive,
p.proname_en
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.sari_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid and tps.status = 1
inner join niphc0_nphl.laboratory l on l.labid = patient.patsource
left join niphc0_nphl.province p on p.proid = patient.frompro
WHERE patient.patgroup =2
and patient.status = 1
".$cond);
".$cond . "
group by
patient.labcode,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
patient.patage,
patient.patsex,
p.proname_en;"
);
$this->insert_surveillance_cases($sari_cases);
@@ -71,7 +82,7 @@ class DataRetrievalService
if(trs.rtitle='Negatives', 0, 1) as is_positive,
if(trs.rtitle !='Negatives', concat('Influenza ',LEFT(UPPER(trs.rtitle),1)),'') pathogen_name,
if(trs.rtitle !='Negatives', trs.rtitle, '') as subtype,
'SARI Influenza Test' as indicator
'Influenza' as indicator
FROM `labopatients` patient
inner join sari_patients sr_p on sr_p.patid = patient.patid
inner join test_patsample tps on tps.patientid = patient.patid
@@ -93,7 +104,7 @@ class DataRetrievalService
if(trs.rtitle='Negative', 0, 1) as is_positive,
if(trs.rtitle !='Negative', 'SARS-CoV-2', '') as pathogen_name,
'' as subtype,
'SARI Covid Test' as indicator
'Covid-19' as indicator
FROM `labopatients` patient
inner join sari_patients sr_p
on sr_p.patid = patient.patid
@@ -126,24 +137,33 @@ class DataRetrievalService
->select("
SELECT
patient.labcode,
patient.patdate,
min(if(year(tps.collected)=0,patient.patdate, tps.collected)) as patdate,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
2 as surveillance_id,
niphc0_nphl.get_epi_period(patient.patdate, 'Y') as year_data,
niphc0_nphl.get_epi_period(patient.patdate, 'W') as week_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'Y')) as year_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'W')) as week_data,
patient.patage,
patient.patsex,
NULL as is_alive,
p.proname_en
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.ili_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid and tps.status = 1
inner join niphc0_nphl.laboratory l on l.labid = patient.patsource
left join niphc0_nphl.province p on p.proid = patient.frompro
WHERE patient.patgroup =3
and patient.status = 1
".$cond
".$cond . "
group by
patient.labcode,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
patient.patage,
patient.patsex,
p.proname_en;"
);
@@ -158,7 +178,7 @@ class DataRetrievalService
if(trs.rtitle='Negatives', 0, 1) as is_positive,
if(trs.rtitle !='Negatives', concat('Influenza ',LEFT(UPPER(trs.rtitle),1)),'') pathogen_name,
if(trs.rtitle !='Negatives', trs.rtitle, '') as subtype,
'ILI Influenza Test' as indicator
'Influenza' as indicator
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.ili_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
@@ -182,7 +202,7 @@ class DataRetrievalService
if(trs.rtitle='Negative', 0, 1) as is_positive,
if(trs.rtitle !='Negative', 'SARS-CoV-2', '') as pathogen_name,
'' as subtype,
'ILI Covid Test' as indicator
'Covid-19' as indicator
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.ili_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
@@ -211,24 +231,34 @@ class DataRetrievalService
->select("
SELECT
patient.labcode,
patient.patdate,
min(if(year(tps.collected)=0,patient.patdate, tps.collected)) as patdate,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
3 as surveillance_id,
niphc0_nphl.get_epi_period(patient.patdate, 'Y') year_data,
niphc0_nphl.get_epi_period(patient.patdate, 'W') week_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'Y')) as year_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,patient.patdate, tps.collected), 'W')) as week_data,
patient.patage,
patient.patsex,
NULL as is_alive,
p.proname_en
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.lbms_patients on lbms_patients.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid and tps.status = 1
left join niphc0_nphl.province p on p.proid = patient.frompro
inner join niphc0_nphl.laboratory l on l.labid = patient.patsource
WHERE patient.patgroup = 17
and patient.status = 1
".$cond);
".$cond . "
group by
patient.labcode,
patient.isnewcase,
l.labname_en,
l.labaddress_en,
patient.patage,
patient.patsex,
p.proname_en;"
);
$this->insert_surveillance_cases($lbm_cases);
@@ -241,7 +271,7 @@ class DataRetrievalService
if(trs.rtitle='Negatives', 0, 1) as is_positive,
if(trs.rtitle !='Negatives', concat('Influenza ',LEFT(UPPER(trs.rtitle),1)),'') pathogen_name,
if(trs.rtitle !='Negatives', trs.rtitle, '') as subtype,
'LBM Influenza Test' as indicator
'Influenza' as indicator
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.lbms_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
@@ -264,7 +294,7 @@ class DataRetrievalService
if(trs.rtitle='Negative', 0, 1) as is_positive,
if(trs.rtitle !='Negative', 'SARS-CoV-2', '') as pathogen_name,
'' as subtype,
'LBM Covid Test' as indicator
'Covid-19' as indicator
FROM niphc0_nphl.`labopatients` patient
inner join niphc0_nphl.lbms_patients sr_p on sr_p.patid = patient.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
@@ -287,19 +317,19 @@ class DataRetrievalService
public function getAFICases($dateFrom, $dateTo = NULL)
{
$cond = "";
$cond .= " and afi_lab_result.results_date >= '".date('Y-m-d', strtotime($dateFrom))."' ";
$cond .= (!empty($dateTo)) ? " and afi_lab_result.results_date <='".date('Y-m-d', strtotime($dateTo))."' ":"";
$cond .= " and afi_case.date_of_interview >= '".date('Y-m-d', strtotime($dateFrom))."' ";
$cond .= (!empty($dateTo)) ? " and afi_case.date_of_interview <='".date('Y-m-d', strtotime($dateTo))."' ":"";
$afi_cases = DB::connection('mysql_afi')
->select("
SELECT
afi_lab_result.sample_code as labcode,
afi_lab_result.results_date as patdate,
afi_case.date_of_interview as patdate,
1 as isnewcase,
afi_case.sentinel_site as labname_en,
'' as labaddress_en,
4 as surveillance_id,
niphc0_nphl.get_epi_period(afi_lab_result.results_date, 'Y') as year_data,
niphc0_nphl.get_epi_period(afi_lab_result.results_date, 'W') as week_data,
niphc0_nphl.get_epi_period(afi_case.date_of_interview, 'Y') as year_data,
niphc0_nphl.get_epi_period(afi_case.date_of_interview, 'W') as week_data,
ifnull(DATEDIFF(afi_case.date_of_interview, date_of_birth),180) as patage,
if(afi_case.sex='Male','M','F') as patsex,
NULL as is_alive,
@@ -309,7 +339,8 @@ class DataRetrievalService
left join niphc0_nphl.province p on p.proid = afi_case.residence_province
where
afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null " .$cond);
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null " .$cond);
$this->insert_surveillance_cases($afi_cases);
@@ -321,13 +352,14 @@ class DataRetrievalService
if(afi_lab_result.influenza_result='Positive',1,0) as is_positive,
if(afi_lab_result.influenza_result='Positive', concat('Influenza ',LEFT(UPPER(JSON_UNQUOTE(JSON_EXTRACT(afi_lab_result.influenza_subtypes, '$[0].id'))),1)),'') pathogen_name,
if(afi_lab_result.influenza_result='Positive', REPLACE(UPPER(JSON_UNQUOTE(JSON_EXTRACT(afi_lab_result.influenza_subtypes, '$[0].id'))),'_','/'),'') as subtype,
'AFI Influenza Test' as indicator
'Influenza' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.influenza_result in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
union
@@ -337,13 +369,15 @@ class DataRetrievalService
if(afi_lab_result.sarscov2_result='Positive',1,0) as is_positive,
if(afi_lab_result.sarscov2_result='Positive', 'SARS-CoV-2','') pathogen_name,
'' as subtype,
'AFI Covid Test' as indicator
'Covid-19' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.sarscov2_result in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null
".$cond."
union
@@ -351,15 +385,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.dengue_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.dengue_pcr='Positive', 'Dengue','') pathogen_name,
if(afi_lab_result.dengue_pcr='Positive', 'Dengue Virus','') pathogen_name,
'' as subtype,
'AFI Dengue PCR Test' as indicator
'Dengue Virus|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.dengue_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
union
@@ -367,15 +402,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.chikungunya_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.chikungunya_pcr='Positive', 'Chikungunya','') pathogen_name,
if(afi_lab_result.chikungunya_pcr='Positive', 'Chikungunya Virus','') pathogen_name,
'' as subtype,
'AFI Chikungunya PCR Test' as indicator
'Chikungunya Virus|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.chikungunya_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
union
@@ -383,15 +419,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.leptospira_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.leptospira_pcr='Positive', 'Leptospira','') pathogen_name,
if(afi_lab_result.leptospira_pcr='Positive', 'Leptospira spp.','') pathogen_name,
'' as subtype,
'AFI Leptospira PCR Test' as indicator
'Leptospira spp.|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.leptospira_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
union
@@ -399,15 +436,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.plasmodium_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.plasmodium_pcr='Positive', 'Plasmodium','') pathogen_name,
if(afi_lab_result.plasmodium_pcr='Positive', 'Plasmodium spp.','') pathogen_name,
'' as subtype,
'AFI Plasmodium PCR Test' as indicator
'Plasmodium spp.|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.plasmodium_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -415,15 +453,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.rickettsia_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.rickettsia_pcr='Positive', 'Rickettsia','') pathogen_name,
if(afi_lab_result.rickettsia_pcr='Positive', 'Rickettsia spp.','') pathogen_name,
'' as subtype,
'AFI Rickettsia PCR Test' as indicator
'Rickettsia spp.|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.rickettsia_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -431,15 +470,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.salmonella_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.salmonella_pcr='Positive', 'Salmonella','') pathogen_name,
if(afi_lab_result.salmonella_pcr='Positive', 'Salmonella spp.','') pathogen_name,
'' as subtype,
'AFI Salmonella PCR Test' as indicator
'Salmonella spp.|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.salmonella_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -447,15 +487,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.westnile_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.westnile_pcr='Positive', 'Westnile Nile','') pathogen_name,
if(afi_lab_result.westnile_pcr='Positive', 'West Nile Virus','') pathogen_name,
'' as subtype,
'AFI Westnile PCR Test' as indicator
'West Nile Virus|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.westnile_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -463,15 +504,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.zika_pcr='Positive',1,0) as is_positive,
if(afi_lab_result.zika_pcr='Positive', 'ZIKA','') pathogen_name,
if(afi_lab_result.zika_pcr='Positive', 'ZIKA Virus','') pathogen_name,
'' as subtype,
'AFI ZIKA PCR Test' as indicator
'ZIKA Virus|PCR' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.zika_pcr in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -481,15 +523,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.chikungunya_serum='Positive',1,0) as is_positive,
if(afi_lab_result.chikungunya_serum='Positive', 'Chikungunya','') pathogen_name,
if(afi_lab_result.chikungunya_serum='Positive', 'Chikungunya Virus','') pathogen_name,
'' as subtype,
'AFI Chikungunya Serum Test' as indicator
'Chikungunya Virus|Serum' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.chikungunya_serum in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -497,15 +540,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.dengue_serum='Positive',1,0) as is_positive,
if(afi_lab_result.dengue_serum='Positive', 'Dengue','') pathogen_name,
if(afi_lab_result.dengue_serum='Positive', 'Dengue Virus','') pathogen_name,
'' as subtype,
'AFI Dengue Serum Test' as indicator
'Dengue Virus|Serum' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.dengue_serum in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -513,15 +557,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.westnile_serum='Positive',1,0) as is_positive,
if(afi_lab_result.westnile_serum='Positive', 'Westnile','') pathogen_name,
if(afi_lab_result.westnile_serum='Positive', 'West Nile Virus','') pathogen_name,
'' as subtype,
'AFI Westnile Serum Test' as indicator
'West Nile Virus|Serum' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.westnile_serum in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -529,15 +574,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.zika_serum='Positive',1,0) as is_positive,
if(afi_lab_result.zika_serum='Positive', 'ZIKA','') pathogen_name,
if(afi_lab_result.zika_serum='Positive', 'ZIKA Virus','') pathogen_name,
'' as subtype,
'AFI ZIKA Serum Test' as indicator
'ZIKA Virus|Serum' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.zika_serum in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond."
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond."
UNION
@@ -545,15 +591,16 @@ class DataRetrievalService
afi_lab_result.sample_code as labcode,
4 as surveillance_id,
if(afi_lab_result.je_virus='Positive',1,0) as is_positive,
if(afi_lab_result.je_virus='Positive', 'Japanese Encephalitis','') pathogen_name,
if(afi_lab_result.je_virus='Positive', 'Japanese Encephalitis Virus','') pathogen_name,
'' as subtype,
'AFI Japanese Encephalitis Test' as indicator
'Japanese Encephalitis Virus|Serum' as indicator
FROM afi_db.`afi_tbl_afiform` as afi_case
INNER join afi_db.afi_tbl_result as afi_lab_result on afi_lab_result.unique_afi_id = afi_case.unique_afi_id
where afi_lab_result.sample_code is not null
and afi_lab_result.je_virus in('Negative', 'Positive')
and afi_case.afi_event is NOT null
and afi_lab_result.results_date is not null ".$cond
and afi_case.date_of_interview is not null
and afi_lab_result.sample_code is not null ".$cond
);
$this->insert_surveillance_case_lab_results($afi_lab_results);
@@ -561,62 +608,179 @@ class DataRetrievalService
public function getNSDCases($dateFrom, $dateTo = NULL)
{
return [];
$cond = "";
$cond .= " and sc.sc_date >= '".date('Y-m-d', strtotime($dateFrom))."' ";
$cond .= (!empty($dateTo)) ? " and sc.sc_date <='".date('Y-m-d', strtotime($dateTo))."' ":"";
$nds_cases = DB::connection('mysql_nds')
->select("
SELECT
DISTINCT
sc.sc_sample_code as labcode,
sc.sc_date as patdate,
1 as isnewcase,
site_ad.sn_name as labname_en,
'' as labaddress_en,
5 as surveillance_id,
niphc0_nphl.get_epi_period(sc.sc_date, 'Y') as year_data,
niphc0_nphl.get_epi_period(sc.sc_date, 'W') as week_data,
ifnull(DATEDIFF(sc.sc_date, patient.pat_dob),180) as patage,
if(patient.pat_gender='Male','M','F') as patsex,
NULL as is_alive,
pro.pro_eng as proname_en
from nds_db.tbl_nds_site_invest case_inv
inner join nds_db.tbl_nds_siteinvet_patient inv_patient
on inv_patient.pksi_id = case_inv.pksi_id
inner join nds_db.tbl_nds_site_address site_ad
on site_ad.pksn_id = case_inv.fksn_id
inner join nds_db.tbl_nds_patient patient
on patient.pkpat_id = inv_patient.fkpat_id
inner join nds_db.tbl_nds_basic_sample bs
on bs.fkpat_id = inv_patient.fkpat_id
inner join nds_db.tbl_nds_sample_collection sc
on sc.fkbs_id = bs.pkbs_id
left join nds_db.tblprovince pro
on pro.pkpro_code = JSON_UNQUOTE(JSON_EXTRACT(patient.pat_address, '$[0].province'))
where
sc.sc_sample_code is not null
and length(sc_sample_code)>0 " .$cond);
$this->insert_surveillance_cases($nds_cases);
$nds_lab_results = DB::connection('mysql_nds')
->select("
SELECT
DISTINCT
sc.sc_sample_code as labcode,
5 as surveillance_id,
rt.rt_positive as is_positive,
trt.trt_name pathogen_name,
'' as subtype,
trt.trt_name as indicator
from nds_db.tbl_nds_site_invest case_inv
inner join nds_db.tbl_nds_siteinvet_patient inv_patient
on inv_patient.pksi_id = case_inv.pksi_id
inner join nds_db.tbl_nds_patient patient
on patient.pkpat_id = inv_patient.fkpat_id
inner join nds_db.tbl_nds_basic_sample bs
on bs.fkpat_id = inv_patient.fkpat_id
inner join nds_db.tbl_nds_sample_collection sc
on sc.fkbs_id = bs.pkbs_id
inner join nds_db.tbl_nds_result_test rt
on rt.fkpat_id = bs.fkpat_id
inner join nds_db.tbl_nds_test_result_type trt
on trt.pktrt_id = rt.fktrt_id
where
sc.sc_sample_code is not null
and length(sc_sample_code)>0 " .$cond);
$this->insert_surveillance_case_lab_results($nds_lab_results);
}
public function getSEQCases($dateFrom, $dateTo = NULL)
{
$cond = "";
$cond .= " and patient.patdate >= '".date('Y-m-d', strtotime($dateFrom))."' ";
$cond .= (!empty($dateTo)) ? " and patient.patdate <='".date('Y-m-d', strtotime($dateTo))."' ":"";
$cond .= " and c.patdate >= '".date('Y-m-d', strtotime($dateFrom))."' ";
$cond .= (!empty($dateTo)) ? " and c.patdate <='".date('Y-m-d', strtotime($dateTo))."' ":"";
$seq_cases = DB::connection('mysql_nphl')
->select("
SELECT DISTINCT
patient.labcode,
patient.patdate,
patient.isnewcase,
c.labcode,
min(if(year(tps.collected)=0,c.patdate, tps.collected)) as patdate,
c.isnewcase,
l.labname_en,
l.labaddress_en,
6 as surveillance_id,
niphc0_nphl.get_epi_period(patient.patdate, 'Y') as year_data,
niphc0_nphl.get_epi_period(patient.patdate, 'W') as week_data,
patient.patage,
patient.patsex,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,c.patdate, tps.collected), 'Y')) as year_data,
min(niphc0_nphl.get_epi_period(if(year(tps.collected)=0,c.patdate, tps.collected), 'W')) as week_data,
c.patage,
c.patsex,
NULL as is_alive,
pro.proname_en
from niphc0_nphl.sq_batch sqb
inner join niphc0_nphl.sq_sub_batch sqsb on sqsb.bt_id = sqb.bt_id
inner join niphc0_nphl.labopatients patient on patient.patid = sqsb.patid
inner join niphc0_nphl.laboratory l on l.labid = patient.patsource
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
inner join niphc0_nphl.labopatients c on c.patid = sqsb.patid
inner join niphc0_nphl.laboratory l on l.labid = p.patsource
inner join niphc0_nphl.test_patsample tps on tps.patientid = c.patid and tps.status = 1
inner join niphc0_nphl.test_patsamtest tpst on tpst.patsmid = tps.sampleid and tpst.patid = tps.patientid
left join niphc0_nphl.province pro on pro.proid = patient.frompro
where patient.status = 1
left join niphc0_nphl.province pro on pro.proid = c.frompro
where c.status = 1
and tpst.labtestid IN ( 659, 662, 666, 667, 668 )
" . $cond);
" . $cond . "
group by
c.labcode,
c.isnewcase,
l.labname_en,
l.labaddress_en,
c.patage,
c.patsex,
pro.proname_en;"
);
$this->insert_surveillance_cases($seq_cases);
$seq_lab_results = DB::connection('mysql_nphl')
->select("
SELECT DISTINCT
patient.labcode,
SELECT
labcode,
6 as surveillance_id,
1 is_positive,
ifnull(sqsb.seqlineage,'N/A') as pathogen_name,
trs.rtitle as subtype,
concat('Sequencing Test ', case when patgroup=2 then 'SARI' when patgroup=3 then 'ILI' when patgroup=19 then 'COVID-19' else '' end) as indicator
from niphc0_nphl.sq_batch sqb
inner join niphc0_nphl.sq_sub_batch sqsb on sqsb.bt_id = sqb.bt_id
inner join niphc0_nphl.labopatients patient on patient.patid = sqsb.patid
inner join niphc0_nphl.test_patsample tps on tps.patientid = patient.patid
inner join niphc0_nphl.test_patsamtest tpst on tpst.patsmid = tps.sampleid and tpst.patid = tps.patientid
inner join niphc0_nphl.test_pattestresult tptr on tptr.pstid = tpst.pstid
inner join niphc0_nphl.test_resultselect trs on trs.rid = tptr.rsltid
where patient.status = 1
and tpst.labtestid IN ( 659, 662, 666, 667, 668 )
and trs.rtitle not in ('Inconclusive', 'In Progress')
" . $cond);
ifnull(seqlineage,'N/A') as pathogen_name,
GROUP_CONCAT(seq_result SEPARATOR '') as subtype,
(case
when (Group_concat(influ_result SEPARATOR '')='Negatives' or Group_concat(influ_result SEPARATOR '')='') and Group_concat(covid_result SEPARATOR '')='Positive' then 'Covid-19'
when (Group_concat(influ_result SEPARATOR '') !='Negatives' and Group_concat(influ_result SEPARATOR '')!='') and Group_concat(covid_result SEPARATOR '')='Negative' then 'Influenza'
when (Group_concat(influ_result SEPARATOR '') !='Negatives' and Group_concat(influ_result SEPARATOR '')!='') and Group_concat(covid_result SEPARATOR '')='Positive' then 'Co-infection'
else 'N/A'
end) as indicator
FROM (SELECT
c.labcode,
( CASE
WHEN e1.labtestid IN ( 238, 340, 381 ) THEN e3.rtitle
ELSE ''
end ) influ_result,
( CASE
WHEN e1.labtestid IN ( 650, 651 ) THEN e3.rtitle
ELSE ''
end ) covid_result,
( CASE
WHEN e1.labtestid IN ( 668, 659, 666, 667, 662 ) THEN
e3.rtitle
ELSE ''
end ) seq_result,
b.seqlineage
FROM niphc0_nphl.sq_batch a
LEFT JOIN niphc0_nphl.sq_sub_batch b
ON a.bt_id = b.bt_id
LEFT JOIN niphc0_nphl.labopatients c
ON b.patid = c.patid
LEFT JOIN niphc0_nphl.laboratory d
ON c.patsource = d.labid
LEFT JOIN niphc0_nphl.test_patsamtest e1
ON c.patid = e1.patid
LEFT JOIN niphc0_nphl.test_pattestresult e2
ON e1.pstid = e2.pstid
LEFT JOIN niphc0_nphl.test_resultselect e3
ON e2.rsltid = e3.rid
LEFT JOIN niphc0_nphl.ncov_patients e4
ON c.patid = e4.patid
LEFT JOIN niphc0_nphl.test_patsample e5
ON c.patid = e5.patientid
AND e5.sampleid = e1.patsmid
LEFT JOIN niphc0_nphl.test_patsmpbyunit f
ON e5.sampleid = f.patsamid
AND c.patid = f.patid
WHERE e1.labtestid IN ( 238, 340, 381, 650,
651, 668, 659, 666,
667, 662 )
" . $cond . "
) tbl_a
GROUP BY labcode,
seqlineage
HAVING
GROUP_CONCAT(seq_result SEPARATOR '') not in ('','Inconclusive', 'In Progress')
");
$this->insert_surveillance_case_lab_results($seq_lab_results);

12
dashboard/config/app.php
View File

@@ -16,12 +16,12 @@ return [
'name' => env('APP_NAME', 'Laravel'),
'lookback_days' => [
'SARI' => 777, //
'ILI' => 777,
'LBM' => 777,
'AFI' => 777,
'NDS' => 777,
'SEQ' => 200
'SARI' => 7, //
'ILI' => 7,
'LBM' => 7,
'AFI' => 7,
'NDS' => 7,
'SEQ' => 7
],
/*

635
dashboard/public/js/overview.js
View File

@@ -1,4 +1,8 @@
let trendChart;
let influenzaSubtypeChart;
let covidDistributedByAgeChart;
let covidLineageFrequencyChart;
let influenzaSubtypeFrequencyChart;
let map;
/*
@@ -30,7 +34,7 @@ function loadSummary() {
<div class="d-flex justify-content-between">
<div>
<h6 class="fw-bold">${item.code}</h6>
<h6 class="fw-bold">${item.code} Cases</h6>
<h3 class="mb-1">${item.current_total}</h3>
<small class="text-muted">Last 7 days</small>
</div>
@@ -102,12 +106,15 @@ function loadTrend(periodType, startYear, startWeek, endYear, endWeek) {
const colors = {
SARI: '#2563eb',
ILI: '#10b981',
LBM: '#9333ea'
LBM: '#9333ea',
AFI: '#fc5741',
NDS: '#d59d01',
SEQ: '#9ca3af'
};
const datasets = [];
const allowedPrograms = ['SARI', 'ILI', 'LBM'];
const allowedPrograms = ['SARI', 'ILI', 'LBM', 'AFI', 'NDS', 'SEQ'];
Object.keys(data).forEach(code => {
@@ -145,7 +152,10 @@ function loadTrend(periodType, startYear, startWeek, endYear, endWeek) {
options: {
responsive: true,
plugins: {
legend: { position: 'bottom' }
legend: { position: 'bottom' },
datalabels: {
display: false
}
},
interaction: {
mode: 'index',
@@ -154,15 +164,499 @@ function loadTrend(periodType, startYear, startWeek, endYear, endWeek) {
scales: {
y: {
beginAtZero: true,
ticks: { stepSize: 1 }
ticks: {
stepSize: 1
},
x: { grid: { display: false } }
title: {
display: true,
text: 'Number of Cases'
},
},
x: {
grid: {
display: false
},
title: {
display: true,
text: 'Surveillance'
},
}
}
}
});
});
}
function loadInfluenzaSubtypeDistribution(periodType, startYear, startWeek, endYear, endWeek) {
fetch(`/api/dashboard/influenza-subtype-distribution?period_type=${periodType}&start_year=${startYear}&start_week=${startWeek}&end_year=${endYear}&end_week=${endWeek}`)
.then(res => res.json())
.then(data => {
let displayLabels = data.map(item => item.subtype);
let dataset = data.map(item => item.total);
const colors = [
'rgba(177,111,243,0.94)'
];
if (influenzaSubtypeChart) influenzaSubtypeChart.destroy();
influenzaSubtypeChart = new Chart(document.getElementById('influenzaSubtypeDistribution'), {
type: 'bar', // you can change to 'pie', 'doughnut', etc.
data: {
labels: displayLabels,
datasets: [{
data: dataset,
backgroundColor: colors,
}]
},
options: {
indexAxis: 'y',
responsive: true,
plugins: {
legend: {
display: false,
position:'right'
},
datalabels: {
color: '#ffffff',
backgroundColor: 'rgba(68,76,68,0.31)',
borderRadius: 6,
z: 1000,
padding: {
top: 6,
bottom: 6,
left: 10,
right: 10
},
font: {
weight: 'bold',
size: 12
},
formatter: (value) => value,
anchor: 'end',
align: 'end',
offset: 10,
clamp: false
}
},
scales: {
x: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Number of Positive Influenza Subtypes'
}
},
y: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Influenza Subtypes'
},
grid:{
display: false
}
}
}
},
plugins: [ChartDataLabels]
});
});
}
function loadCovidDistributedByAgeGroup(periodType, startYear, startWeek, endYear, endWeek) {
fetch(`/api/dashboard/covid-distributed-by-age-group?period_type=${periodType}&start_year=${startYear}&start_week=${startWeek}&end_year=${endYear}&end_week=${endWeek}`)
.then(res => res.json())
.then(data => {
let displayLabels = data.map(item => item.age_group);
let dataset = data.map(item => item.total);
const colors = [
'#84cc16'
];
if (covidDistributedByAgeChart) covidDistributedByAgeChart.destroy();
covidDistributedByAgeChart = new Chart(document.getElementById('covidDistributedByAgeGroup'), {
type: 'bar', // you can change to 'pie', 'doughnut', etc.
data: {
labels: displayLabels,
datasets: [{
label: 'Total Covid-19 Detected',
data: dataset,
backgroundColor: colors,
}]
},
options: {
responsive: true,
plugins: {
legend: {
display: false,
position:'bottom'
},
datalabels: {
color: '#fff',
backgroundColor: 'rgba(68,76,68,0.7)',
borderRadius: 6,
z: 1000,
padding: {
top: 6,
bottom: 6,
left: 10,
right: 10
},
font: {
weight: 'bold',
size: 12
},
formatter: (value) => value,
anchor: 'end',
align: 'end',
offset: 10,
clamp: false
}
},
scales: {
x: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Patient Age Group'
},
grid:{
display: false
}
},
y: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Number of Positive SARS-CoV-2'
}
}
}
}
});
});
}
function loadCovidLineageFrequency(periodType, startYear, startWeek, endYear, endWeek) {
fetch(`/api/dashboard/covid-lineage-frequency?period_type=${periodType}&start_year=${startYear}&start_week=${startWeek}&end_year=${endYear}&end_week=${endWeek}`)
.then(res => res.json())
.then(data => {
// Extract unique weeks (X-axis)
const weeks = [...new Set(data.map(item => item.week))].sort();
// Extract unique lineages
const lineages = [...new Set(data.map(item => item.lineage))];
// Color palette
const colors = [
'#84cc16','#22c55e','#06b6d4','#3b82f6',
'#6366f1','#a855f7','#ec4899','#ef4444',
'#f97316','#eab308'
];
// Build datasets
const datasets = lineages.map((lineage, index) => {
const lineageData = weeks.map(week => {
const found = data.find(
item => item.week === week && item.lineage === lineage
);
return found ? found.total : 0;
});
return {
label: lineage,
data: lineageData,
fill: true, // area fill
tension: 0.4, // smooth curve
borderColor: 'transparent', // hide the line
borderWidth: 0,
pointRadius: 0, // hide points
backgroundColor: hexToRGBA(colors[index % colors.length], 0.3),
stack: 'total'
};
});
// Destroy previous chart if exists
if (covidLineageFrequencyChart) covidLineageFrequencyChart.destroy();
const ctx = document.getElementById('covidLineageFrequency').getContext('2d');
covidLineageFrequencyChart = new Chart(ctx, {
type: 'line',
data: {
labels: weeks,
datasets: datasets
},
options: {
responsive: true,
maintainAspectRatio: false,
interaction: {
mode: 'index',
intersect: false
},
plugins: {
legend: {
display: false // hide default legend
},
tooltip: {
mode: 'index',
intersect: false
},
datalabels: {
display: false // hide labels
}
},
scales: {
x: {
stacked: true,
title: {
display: true,
text: 'Week'
},
grid:{
display: false
}
},
y: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Relative Frequency'
},
}
}
}
});
// -------------------------
// Custom right-side scrollable legend
// -------------------------
const legendContainer = document.getElementById('legendContainer');
legendContainer.innerHTML = ''; // clear old legend
datasets.forEach((dataset, index) => {
const item = document.createElement('div');
item.style.display = 'flex';
item.style.alignItems = 'center';
item.style.marginBottom = '4px';
item.style.fontSize = '11px';
item.style.cursor = 'pointer';
item.innerHTML = `
<span style="width:15px;height:15px;background:${dataset.backgroundColor};display:inline-block;margin-right:8px;"></span>
${dataset.label}
`;
item.addEventListener('click', () => {
const meta = covidLineageFrequencyChart.getDatasetMeta(index);
// If the clicked dataset is already the only visible one, show all
const allHidden = datasets.every((d, i) => covidLineageFrequencyChart.getDatasetMeta(i).hidden || i === index);
if (!allHidden) {
// Hide all datasets
datasets.forEach((d, i) => {
covidLineageFrequencyChart.getDatasetMeta(i).hidden = true;
});
// Show only clicked
meta.hidden = false;
} else {
// Show all datasets
datasets.forEach((d, i) => {
covidLineageFrequencyChart.getDatasetMeta(i).hidden = false;
});
}
covidLineageFrequencyChart.update();
// Update legend opacity
Array.from(legendContainer.children).forEach((child, i) => {
const metaItem = covidLineageFrequencyChart.getDatasetMeta(i);
child.style.opacity = metaItem.hidden ? 0.5 : 1;
});
});
legendContainer.appendChild(item);
});
// Scrollable CSS (in case legend is long)
legendContainer.style.maxHeight = '375px';
legendContainer.style.overflowY = 'auto';
legendContainer.style.padding = '8px';
legendContainer.style.borderRadius = '0px';
});
}
function loadInfluenzaSubtypeFrequency(periodType, startYear, startWeek, endYear, endWeek) {
fetch(`/api/dashboard/influenza-relative-frequency?period_type=${periodType}&start_year=${startYear}&start_week=${startWeek}&end_year=${endYear}&end_week=${endWeek}`)
.then(res => res.json())
.then(data => {
// Extract unique weeks (X-axis)
const weeks = [...new Set(data.map(item => item.week))].sort();
const colors = [
'#84cc16','#22c55e','#06b6d4','#3b82f6',
'#6366f1','#a855f7','#ec4899','#ef4444',
'#f97316','#eab308'
];
// Extract unique lineages
const lineages = [...new Set(data.map(item => item.lineage))];
// Build datasets
const datasets = lineages.map((lineage, index) => {
const lineageData = weeks.map(week => {
const found = data.find(
item => item.week === week && item.lineage === lineage
);
return found ? found.total : 0;
});
return {
label: lineage,
data: lineageData,
fill: true, // area fill
tension: 0.4, // smooth curve
borderColor: 'transparent', // hide the line
borderWidth: 0,
pointRadius: 0, // hide points
backgroundColor: hexToRGBA(colors[index % colors.length], 0.3),
stack: 'total'
};
});
// Destroy previous chart if exists
if (influenzaSubtypeFrequencyChart) influenzaSubtypeFrequencyChart.destroy();
const ctx = document.getElementById('influenzaSubtypeFrequency').getContext('2d');
influenzaSubtypeFrequencyChart = new Chart(ctx, {
type: 'line',
data: {
labels: weeks,
datasets: datasets
},
options: {
responsive: true,
maintainAspectRatio: false,
interaction: {
mode: 'index',
intersect: false
},
plugins: {
legend: {
display: false // hide default legend
},
tooltip: {
mode: 'index',
intersect: false
},
datalabels: {
display: false // hide labels
}
},
scales: {
x: {
stacked: true,
title: {
display: true,
text: 'Week'
},
grid:{
display: false
}
},
y: {
stacked: true,
beginAtZero: true,
title: {
display: true,
text: 'Relative Frequency'
},
}
}
}
});
const legendContainer = document.getElementById('legendContainerInfluenzaSubtypeFrequency');
legendContainer.innerHTML = ''; // clear old legend
datasets.forEach((dataset, index) => {
const item = document.createElement('div');
item.style.display = 'flex';
item.style.alignItems = 'center';
item.style.marginBottom = '4px';
item.style.fontSize = '11px';
item.style.cursor = 'pointer';
item.innerHTML = `
<span style="width:15px;height:15px;background:${dataset.backgroundColor};display:inline-block;margin-right:8px;"></span>
${dataset.label}
`;
item.addEventListener('click', () => {
const meta = influenzaSubtypeFrequencyChart.getDatasetMeta(index);
// If the clicked dataset is already the only visible one, show all
const allHidden = datasets.every((d, i) => influenzaSubtypeFrequencyChart.getDatasetMeta(i).hidden || i === index);
if (!allHidden) {
// Hide all datasets
datasets.forEach((d, i) => {
influenzaSubtypeFrequencyChart.getDatasetMeta(i).hidden = true;
});
// Show only clicked
meta.hidden = false;
} else {
// Show all datasets
datasets.forEach((d, i) => {
influenzaSubtypeFrequencyChart.getDatasetMeta(i).hidden = false;
});
}
influenzaSubtypeFrequencyChart.update();
// Update legend opacity
Array.from(legendContainer.children).forEach((child, i) => {
const metaItem = influenzaSubtypeFrequencyChart.getDatasetMeta(i);
child.style.opacity = metaItem.hidden ? 0.5 : 1;
});
});
legendContainer.appendChild(item);
});
// Scrollable CSS (in case legend is long)
legendContainer.style.maxHeight = '375px';
legendContainer.style.overflowY = 'auto';
legendContainer.style.padding = '8px';
legendContainer.style.borderRadius = '0px';
});
}
// -------------------------
// Helper to convert hex to rgba
// -------------------------
function hexToRGBA(hex, alpha) {
const r = parseInt(hex.slice(1, 3), 16);
const g = parseInt(hex.slice(3, 5), 16);
const b = parseInt(hex.slice(5, 7), 16);
return `rgba(${r}, ${g}, ${b}, ${alpha})`;
}
function updateAlerts() {
if (!window._summaryData || !window._provinceData) return;
@@ -380,10 +874,14 @@ function renderAlerts(alerts) {
|--------------------------------------------------------------------------
*/
function getPositivityColor(p) {
if (p > 20) return "#b91c1c";
if (p > 10) return "#ef4444";
if (p > 5) return "#f59e0b";
if (p > 0) return "#84cc16";
if (p == 'A/H1N1pdm') return "#2563eb";
if (p == 'A/H3N2') return "#11de9d";
if (p == 'B/Yam') return "#9333ea";
if (p == 'B/Vic') return "#1021b9";
if (p == 'A/H9N2') return "#b91081";
if (p == 'A/H5N1') return "#ad850d";
if (p == 'A/Unsubtypable') return "#047393";
if (p == 'B/Unsubtypable') return "#890512";
return "#9ca3af";
}
function normalizeProvince(name, validSet) {
@@ -432,13 +930,15 @@ function addPositivityLegend() {
div.innerHTML = `
<div style="background:white;padding:10px 12px;border-radius:6px;
box-shadow:0 2px 6px rgba(0,0,0,0.2);font-size:12px;">
<div style="font-weight:600;margin-bottom:6px;">Positivity</div>
<div><span style="border:3px solid #b91c1c;width:12px;height:12px;display:inline-block;margin-right:6px;"></span>> 20%</div>
<div><span style="border:3px solid #ef4444;width:12px;height:12px;display:inline-block;margin-right:6px;"></span>10–20%</div>
<div><span style="border:3px solid #f59e0b;width:12px;height:12px;display:inline-block;margin-right:6px;"></span>5–10%</div>
<div><span style="border:3px solid #84cc16;width:12px;height:12px;display:inline-block;margin-right:6px;"></span>0–5%</div>
<div><span style="border:3px solid #9ca3af;width:12px;height:12px;display:inline-block;margin-right:6px;"></span>0%</div>
<div style="font-weight:600;margin-bottom:6px;">Influenza Subtypes</div>
<div><span style="background: #2563eb; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>A/H1N1pdm</div>
<div><span style="background: #11de9d; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>A/H3N2</div>
<div><span style="background: #b91081; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>A/H9N2</div>
<div><span style="background: #ad850d; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>A/H5N1</div>
<div><span style="background: #047393; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>A/Unsubtypable</div>
<div><span style="background: #9333ea; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>B/Yam</div>
<div><span style="background: #1021b9; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>B/Vic</div>
<div><span style="background: #890512; border: 2px solid #aa9d9d; width:12px;height:12px;display:inline-block;margin-right:6px; border-radius: 50%;"></span>B/Unsubtypable</div>
</div>
`;
@@ -490,52 +990,42 @@ function loadProvinceMap(startYear, startWeek, endYear, endWeek) {
const center = layer.getBounds().getCenter();
const rows = data.filter(d => {
if (![1, 2, 3].includes(d.surveillance_id)) return false;
const name = normalizeProvince(d.patient_province, validProvinces);
return name === province;
});
const offsets = { 1: -0.15, 2: 0, 3: 0.15 };
if (!rows.length) return;
const colors = {
1: '#2563eb',
2: '#10b981',
3: '#9333ea'
};
// 👉 group by pathogen_name
const pathogens = [...new Set(rows.map(r => r.pathogen_name))];
const spacing = 1; //0.12; // adjust spacing between circles
rows.forEach(row => {
const percent = row.total
? ((row.positive / row.total) * 100).toFixed(1)
: 0;
const offset = offsets[row.surveillance_id] ?? 0;
// 👉 dynamic offset based on pathogen index
const index = pathogens.indexOf(row.pathogen_name);
const offset = (index - (pathogens.length - 1) / 2) * spacing;
const lat = center.lat;
const lng = center.lng + offset;
const programName =
row.surveillance_id === 1 ? 'SARI' :
row.surveillance_id === 2 ? 'ILI' : 'LBM';
L.circleMarker([lat, lng], {
radius: getRadius(row.total),
fillColor: colors[row.surveillance_id],
color: getPositivityColor(percent),
fillColor: getColorByPathogen(row.pathogen_name), // 👈 new function
color: getPositivityColor(row.pathogen_nam),
weight: 2,
fillOpacity: 0.9
})
.bindTooltip(`
<strong>${province}</strong><br>
${programName}<br>
Cases: ${row.total}<br>
Positivity: ${percent}%
${row.pathogen_name}<br>
Total Detected: ${row.total}<br>
`)
.addTo(map);
});
}
}).addTo(map);
@@ -544,6 +1034,21 @@ function loadProvinceMap(startYear, startWeek, endYear, endWeek) {
}
function getColorByPathogen(name) {
const colors = {
"A/H1N1pdm": "#2563eb",
"A/H3N2": "#11de9d",
"B/Yam": "#9333ea",
"B/Vic" : "#1021b9",
"A/H9N2": "#b91081",
"A/H5N1": "#ad850d",
"A/Unsubtypable": "#047393",
"B/Unsubtypable": "#890512"
};
return colors[name] || "#000000"; // fallback color
}
/*
|--------------------------------------------------------------------------
@@ -558,8 +1063,58 @@ document.addEventListener("DOMContentLoaded", () => {
new DashboardFilter((startYear, startWeek, endYear, endWeek) => {
loadTrend('week', startYear, startWeek, endYear, endWeek);
loadInfluenzaSubtypeDistribution('week', startYear, startWeek, endYear, endWeek);
loadCovidDistributedByAgeGroup('week', startYear, startWeek, endYear, endWeek);
loadInfluenzaSubtypeFrequency('week', startYear, startWeek, endYear, endWeek);
loadCovidLineageFrequency('week', startYear, startWeek, endYear, endWeek);
loadProvinceMap(startYear, startWeek, endYear, endWeek);
const elements = document.querySelectorAll(".report-period");
elements.forEach(el => {
el.textContent = 'Week ' + startWeek + ' of '+startYear+' to ' + 'Week ' + endWeek + ' of ' + endYear
});
});
});
document.addEventListener("DOMContentLoaded", function () {
let currentSlide = 0;
const slides = document.querySelectorAll('.slide');
const nextBtn = document.querySelector('.next-btn');
const prevBtn = document.querySelector('.prev-btn');
function showSlide(index) {
slides.forEach((slide, i) => {
slide.classList.remove('active', 'prev');
if (i === index) {
slide.classList.add('active');
} else if (i === index - 1) {
slide.classList.add('prev');
}
});
}
function nextSlide() {
currentSlide = (currentSlide + 1) % slides.length;
showSlide(currentSlide);
}
function prevSlide() {
currentSlide = (currentSlide - 1 + slides.length) % slides.length;
showSlide(currentSlide);
}
// Button events
nextBtn.addEventListener('click', nextSlide);
prevBtn.addEventListener('click', prevSlide);
// Auto slide every 1 minute
let slideInterval = 2 * (60 * 1000);
setInterval(nextSlide, slideInterval);
// Init
showSlide(currentSlide);
});

1
dashboard/public/js/program.js
View File

@@ -140,7 +140,6 @@ function renderProvinceHeatmap(rows) {
const total = totals[province]?.total || 0;
const positive = totals[province]?.positive || 0;
// ✅ positivity kept
const percent = total
? ((positive / total) * 100).toFixed(1)
: 0;

158
dashboard/resources/views/dashboard/overview.blade.php
View File

@@ -20,7 +20,6 @@
</select>
<div id="custom_range_container" style="display:none;" class="align-items-center gap-1">
<select id="start_year" class="form-select"></select>
<select id="start_week" class="form-select"></select>
@@ -28,88 +27,155 @@
<select id="end_year" class="form-select"></select>
<select id="end_week" class="form-select"></select>
</div>
</div>
</div>
<!-- Summary Cards -->
<div class="row flex-grow-1" id="summary_cards"></div>
<div class="row flex-grow-1 mb-2" id="summary_cards"></div>
<!-- SLIDESHOW -->
<div class="row">
<div class="col-8">
<div class="row flex-grow-1">
<div class="slide-wrapper">
<!-- LEFT COLUMN -->
<div class="col-lg-8 d-flex flex-column">
<!-- SLIDE 1 -->
<div class="slide active">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<!-- Trend Chart -->
<div class="card shadow-sm mb-3 flex-grow-1">
<div class="card shadow-sm mb-3" style="height:60vh;">
<div class="card-body" >
<div class="mb-3">
<h5 class="fw-bold mb-1">Epidemic Trend</h5>
<p class="text-muted small mb-0">
<h5 class="fw-bold">Epidemic Trend</h5>
<p class="text-muted small report-period">
(based on selected epiweek range)
</p>
</div>
<canvas id="trendChart" height="90"></canvas>
</div>
</div>
<!-- Alerts -->
<div class="card shadow-sm flex-grow-1">
</div>
</div>
</div>
<!-- SLIDE 2 -->
<div class="slide">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<div class="card shadow-sm" style="height:60vh;">
<div class="card-body">
<h5 class="fw-bold">Influenza Subtypes Distribution</h5>
<p class="text-muted small report-period">
(based on selected epiweek range)
</p>
<h5 class="fw-bold">Recent Alerts & Notifications</h5>
<canvas id="influenzaSubtypeDistribution" style="max-width: 100%; max-height:40vh; float: left;"></canvas>
<ul id="alertsList" class="list-group list-group-flush mt-3"></ul>
</div>
</div>
</div>
</div>
</div>
<!-- SLIDE 3 -->
<div class="slide">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<div class="card shadow-sm" style="height:60vh;">
<div class="card-body">
<h5 class="fw-bold">SARS-CoV-2 Detected Distribute by Age Group</h5>
<p class="text-muted small report-period">
(based on selected epiweek range)
</p>
<canvas id="covidDistributedByAgeGroup" style="max-width: 100%; max-height:40vh; float: left;"></canvas>
</div>
</div>
<!-- RIGHT COLUMN -->
<div class="col-lg-4 d-flex flex-column">
</div>
</div>
</div>
<!-- SLIDE 3 -->
<div class="slide">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<div class="card shadow-sm" style="height:60vh; display: flex">
<div class="card-body" >
<h5 class="fw-bold">SARS-CoV-2 Lineage Relative Frequencies Over Time</h5>
<p class="text-muted small report-period">
(based on selected epiweek range)
</p>
<canvas id="covidLineageFrequency" style=" flex:1; max-width: 90%; max-height:45vh; float: left;"></canvas>
<div id="legendContainer" style="
width:10%;
margin-left:20px;
max-height:375px;
overflow-y:auto;
padding:8px;
"></div>
</div>
</div>
</div>
</div>
</div>
<!-- SLIDE 3 -->
<div class="slide">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<div class="card shadow-sm" style="height:60vh; display: flex">
<div class="card-body" >
<h5 class="fw-bold">Influenza Subtypes Relative Frequencies Over Time</h5>
<p class="text-muted small report-period">
(based on selected epiweek range)
</p>
<canvas id="influenzaSubtypeFrequency" style=" flex:1; max-width: 90%; max-height:45vh; float: left;"></canvas>
<div id="legendContainerInfluenzaSubtypeFrequency" style="
width:10%;
margin-left:20px;
max-height:375px;
overflow-y:auto;
padding:8px;
"></div>
</div>
</div>
</div>
</div>
</div>
<!-- CONTROLS -->
<button class="slide-btn prev-btn">❮</button>
<button class="slide-btn next-btn">❯</button>
</div>
</div>
<div class="col-4">
<div class="row">
<div class="col-lg-12 d-flex flex-column">
<div class="card shadow-sm">
<div class="card-body">
<h5 class="fw-bold">Total Cases by Provinces</h5>
<p class="text-muted small">(based on selected epiweek range)</p>
<h5 class="fw-bold">Influenza Subtypes Detected by Province</h5>
<p class="text-muted small report-period">(based on selected epiweek range)</p>
<div id="provinceMap" style="height:50vh;"></div>
<div class="d-flex justify-content-center align-items-center gap-4 mt-4 small">
<span>
<span
style="display:inline-block;width:10px;height:10px;background:#2563eb;border-radius:50%;margin-right:6px;"></span>
SARI
</span>
<span>
<span
style="display:inline-block;width:10px;height:10px;background:#10b981;border-radius:50%;margin-right:6px;"></span>
ILI
</span>
<span>
<span
style="display:inline-block;width:10px;height:10px;background:#9333ea;border-radius:50%;margin-right:6px;"></span>
LBM
</span>
</div>
<div id="provinceMap" style="height:40vh;"></div>
</div>
</div>
</div>
</div>
</div>
</div>

97
dashboard/resources/views/layouts/app.blade.php
View File

@@ -92,7 +92,8 @@
.content-area {
padding: 20px;
background: #f8f9fa;
min-height: calc(100vh - 60px);
/*min-height: calc(100vh - 60px);*/
min-height: calc(100vh - 110px);
}
.brand-logo {
@@ -107,9 +108,65 @@
border: 1px solid #E5E7EB;
}
.form-select{
border-radius: 0px !important;
}
.shadow-sm{
box-shadow: none !important;
}
.card h3 {
color: #0B8F3C;
}
.slide-wrapper {
position: relative;
overflow: hidden;
height: 100%;
min-height: 400px;
}
.slide {
position: absolute;
width: 100%;
top: 0;
left: 100%;
opacity: 0;
transition: all 0.5s ease-in-out;
}
.slide.active {
left: 0;
opacity: 1;
z-index: 2;
}
.slide.prev {
left: -100%;
opacity: 0;
}
/* Buttons */
.slide-btn {
position: absolute;
top: 10%;
transform: translateY(-50%);
background: rgba(0, 128, 0, 0.43);
color: white;
border: none;
padding: 8px 15px;
cursor: pointer;
z-index: 10;
}
.prev-btn { right: 75px; }
.next-btn { right: 25px; }
.slide-btn:hover {
background: rgba(7, 120, 24, 0.8);
}
</style>
</head>
@@ -135,31 +192,31 @@
Overview
</a>
<!-- @foreach($programs as $program)
<a href="/dashboard/{{ strtolower($program->code) }}"
@foreach($programs as $program)
<a href="/dashboard/{{ strtolower($program->code) }}" title="{{$program->name_en}}"
class="nav-item {{ request()->is('dashboard/' . strtolower($program->code)) ? 'active-tab' : '' }}">
{{ $program->code }}
</a>
@endforeach -->
@foreach($programs->where('code', '!=', 'NDS') as $program)
@if($program->code === 'SEQ')
<a href="/dashboard/seq"
class="nav-item {{ request()->is('dashboard/seq') ? 'active-tab' : '' }}">
SEQ
</a>
@else
<a href="/dashboard/{{ strtolower($program->code) }}"
class="nav-item {{ request()->is('dashboard/' . strtolower($program->code)) ? 'active-tab' : '' }}">
{{ $program->code }}
</a>
@endif
@endforeach
{{-- @foreach($programs->where('code', '!=', 'NDS') as $program)--}}
{{-- @if($program->code === 'SEQ')--}}
{{-- <a href="/dashboard/seq"--}}
{{-- class="nav-item {{ request()->is('dashboard/seq') ? 'active-tab' : '' }}">--}}
{{-- SEQ--}}
{{-- </a>--}}
{{-- @else--}}
{{-- <a href="/dashboard/{{ strtolower($program->code) }}"--}}
{{-- class="nav-item {{ request()->is('dashboard/' . strtolower($program->code)) ? 'active-tab' : '' }}">--}}
{{-- {{ $program->code }}--}}
{{-- </a>--}}
{{-- @endif--}}
{{-- @endforeach--}}
<div class="ms-auto d-flex align-items-center gap-4 pe-3">
<button type="button" onclick="reloadDataSource()" class="btn btn-sm btn-theme-outline">
<button type="button" onclick="reloadDataSource()" class="btn btn-sm btn-theme-outline" style="border-radius: 0px !important;">
Refresh Data
</button>
</div>

4
dashboard/routes/api.php
View File

@@ -7,6 +7,10 @@ Route::get('/dashboard/summary', [DashboardController::class, 'summary']);
Route::get('/dashboard/trend', [DashboardController::class, 'trend']);
Route::get('/dashboard/program', [DashboardController::class, 'program']);
Route::get('/dashboard/province-circles', [DashboardController::class, 'provinceCircles']);
Route::get('/dashboard/influenza-subtype-distribution', [DashboardController::class, 'influenzaSubtypeDetected']);
Route::get('/dashboard/covid-distributed-by-age-group', [DashboardController::class, 'covidDistributedByAgeGroup']);
Route::get('/dashboard/covid-lineage-frequency', [DashboardController::class, 'covidLineageRelativeOverTime']);
Route::get('/dashboard/influenza-relative-frequency', [DashboardController::class, 'influenzaRelativeOverTime']);
Route::get('/dashboard/sentinel-map', [DashboardController::class, 'sentinelMap']);
Route::get('/dashboard/reload', [DashboardController::class, 'fetchSourceData']);
Route::get('/dashboard/sequencing', [DashboardController::class, 'sequencing']);